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#!/usr/bin/perl

...
GeneX,GeneY,GeneP,spc1,spc2 
GeneY,spc3,spc4

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C:\Code>perl adjacent.pl
*----------------------------------------------*
Gene1,Gene2,Gene3,Gene4,spc1=5,spc2=5,spc3=2,spc4=1,spc5=1
GeneA,GeneB,GeneC,GeneD,GeneE,GeneF,spc1=3,spc2=3,spc3=1,spc4=1
GeneX,GeneP,GeneY,spc1=1,spc2=1,spc3=1,spc4=1