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  1. or download this
    perl -se '$,="\t"; print split / /, qx/echo @{["{$a}" x $k]}/;' -- -k=
+4 -a='A,T,G,C'
  2. or download this
                     ACTG    ATTG    ATGC   etc
ATGCTGTACTG        1      0        1
ATGATGATCTG        0      0        0
ATGCGTATGCA        0      0        1
ATGCTAGACTG        1      0        1