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#!/usr/bin/perl

...
CG32694-RA    NM_167209
CG32694-RB    NM_167212
CG33557-RA    NM_001014730

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$VAR1 = {
          'CG32694-RD' => '2',
          'CG32694-RB' => '2',
          'CG32694-RC' => '2'
        };