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#!/usr/bin/perl
use warnings;
...
}

exit;

IDs do not match
HWUSI-EAS548:7:120:1791:800#0/1         HWUSI-EAS548:7:1:5:1566#0/1   
+  CCACTGTGCTCCAGACTGCGTGACAGAGTGAGACTC

...

IDs do not match
HWUSI-EAS548:7:1:5:377#0/1              HWUSI-EAS548:7:1:5:893#0/1    
+  TTTGATGATTTCATTTGATTCCATTCGTTAATGATT

HWUSI-EAS548:7:1:5:1527#0/1     +       chr12   52084152        CGGAGC
+TTGCAGTGAGCCGAGATCGCGCTACTGCAC    a`]``_``_```TTXF_[SXU^]aQ`][ZVZVPQ\
+\    29
HWUSI-EAS548:7:1:5:1098#0/1     +       chr1    245241196       CTTTGC
+ATATTTTGGATAGACACCCAGAAGTGGAAT    ababbabbbbababaaaaYV`baab^aa`WXPN^a
+`    0
HWUSI-EAS548:7:1:5:877#0/1      +       chr13   40851377        AGGCCA
+GCAGATCACCTGAGGTTGGGAGTTCGAGAC    a`aaaa^aaaa`b`a`ab^_XZ`a``\`^a`]aRL
+\    1
...
HWUSI-EAS548:7:1:5:68#0/1       +       chr2    68413664        AATTAG
+CCAGGTGTGGTGGCGCATGCCTGTAATCCC    ``bab`bba`XPa[U[__]a`a_X^a`ZZTZOU^`
+_    233
HWUSI-EAS548:7:120:1791:926#0/1 -       chr4    48846414        ATTCCA
+TTCCATTCCATTCCATTCCATTCCGTTCNG    `YS^a`]X_``_W`ba^[aaa``bbbaabaaa`aB
+a    3       1:C>N
HWUSI-EAS548:7:120:1791:800#0/1 -       chr8    13214240        AAAAAA
+AAAAAAAAAAAAAAAAAAAAAATAATTTNT    aaaaaaaaaaa`aaaaaaaaaa`[`aaaT_[a_aB
+`    0       1:C>N

HWUSI-EAS548:7:1:5:1527#0/1     +       chr12   52084152        CGGAGC
+TTGCAGTGAGCCGAGATCGCGCTACTGCAC    a`]``_``_```TTXF_[SXU^]aQ`][ZVZVPQ\
+\    29
HWUSI-EAS548:7:1:5:1098#0/1     +       chr1    245241196       CTTTGC
+ATATTTTGGATAGACACCCAGAAGTGGAAT    ababbabbbbababaaaaYV`baab^aa`WXPN^a
+`    0
HWUSI-EAS548:7:1:5:877#0/1      +       chr13   40851377        AGGCCA
+GCAGATCACCTGAGGTTGGGAGTTCGAGAC    a`aaaa^aaaa`b`a`ab^_XZ`a``\`^a`]aRL
+\    1
...
HWUSI-EAS548:7:1:5:68#0/1       +       chr2    68413664        AATTAG
+CCAGGTGTGGTGGCGCATGCCTGTAATCCC    ``bab`bba`XPa[U[__]a`a_X^a`ZZTZOU^`
+_    233
HWUSI-EAS548:7:120:1791:900#0/1 -       chr4    48846414        ATTCCA
+TTCCATTCCATTCCATTCCATTCCGTTCNG    `YS^a`]X_``_W`ba^[aaa``bbbaabaaa`aB
+a    3       1:C>N
HWUSI-EAS548:7:120:1791:800#0/1 -       chr8    13214240        TTTAAA
+AAAAAAAAAAAAAAAAAAAAAATAATTTNT    aaaaaaaaaaa`aaaaaaaaaa`[`aaaT_[a_aB
+`    0       1:C>N