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```
use warnings;
use strict;
...


exit;
```

Global symbol "$ID2" requires explicit package name at /home/choia2/sc
+ripts/BowtieCompare.pl line 50.
Global symbol "$ID2" requires explicit package name at /home/choia2/sc
+ripts/BowtieCompare.pl line 51.
...
Global symbol "$Seq1" requires explicit package name at /home/choia2/s
+cripts/BowtieCompare.pl line 56.
Global symbol "$Seq2" requires explicit package name at /home/choia2/s
+cripts/BowtieCompare.pl line 56.
Execution of /home/choia2/scripts/BowtieCompare.pl aborted due to comp
+ilation errors.