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#!/usr/bin/perl
use strict;
...
AVDVHVHNGG 10 209 219 2916
ACNGYNDHNGARRT 14 1333 1347 4608
GNDNNVNNRHNNNNVMNNVNNT 22 1589 1611 6291456

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Pair1:
      AVDVHVHNGG 10 209 219 2916
...
      AVDVHVHNGG 10 209 219 2916
      GNDNNVNNRHNNNNVMNNVNNT 22 1589 1611 6291456
Distance: 1370