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#! perl -slw
use strict;
...
GTGTCATGCGTGATACAGGAATGTTCGTTGTGAAAA
GTGTCATGCGTGATACAGGAATGTTCGTTGTGAAAA
GTGTCATGCGTGATACAGGAATGTTCGTTGTGAAAA

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c:\test>junk46
>>HWI-EAS158_40_3_1_46_535
...
TCATGCGTGATACAGGAATGTTCGTTGTGAAAAGTG
TCATGCGTGATACAGGAATGTTCGTTGT