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THAETURQU                .LLL..RRR                HA,AE
JURYATAUTIOPW            .LLL...LL.RRR            UR,RY,UT
TURIWOWQNQQUTYRIOPWMNHF  L..L..LLLL.LL.R..L.LLLL  WQ,QN,NQ,MN,NH,HF

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THAETURQU                .LLL..RRR                HA
JURYATAUTIOPW            .LLL...LL.RRR            UR,UT
TURIWOWQNQQUTYRIOPWMNHF  L..L..LLLL.LL.R..L.LLLL  WQ,NQ,MN,HF

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#!/usr/bin/perl
use strict;
...
THAETURQU                .LLL..RRR
JURYATAUTIOPW            .LLL...LL.RRR
TURIWOWQNQQUTYRIOPWMNHF  L..L..LLLL.LL.R..L.LLLL

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pattern = .LLL
THAETURQU                .LLL..RRR                THAE
...
THAETURQU                .LLL..RRR                HA,AE
JURYATAUTIOPW            .LLL...LL.RRR            UR,RY,UT
TURIWOWQNQQUTYRIOPWMNHF  L..L..LLLL.LL.R..L.LLLL  WQ,QN,NQ,UT,MN,NH,HF