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99_99_992
99_999_930
...
99_99_9992
99_99_9992
99_99_9992

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99_99_992    chr16.fsa    11064    11088    TAGGTAAACGAGGAGTCTTTCAATA 
+   -    25
99_999_930    chr04.fsa    148776    148800    TGCAAACGAGGACAACCTGTTTG
+TG    +    25
...
99_99_9992    chr12.fsa    468138    468162    CTATGTTTTCTTACTCCTATGTC
+TA    -    25
99_99_9992    chr12.fsa    468138    468162    CTATGTTTTCTTACTCCTATGTC
+TA    -    25
...

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99_999_930    chr04.fsa    148776    148800    TGCAAACGAGGACAACCTGTTTG
+TG    +    25
99_999_930    chr04.fsa    148882    148916    CCGGAAAAATTTGCTATTGGAAG
+AGGTGGCGCTGG    -    35
99_99_999    chr12.fsa    468017    468049    TTTTCGGTGACGGAAATACGCTTC
+AGAGACCCT    +    33
99_99_999    chr12.fsa    468138    468162    CTATGTTTTCTTACTCCTATGTCT
+A    -    25

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#!/usr/bin/perl
#use strict;
...

    
close IFILE;