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  1. or download this
    tomD gly4 phil
aesG tomD gly4 phil  
aesG phil 
aesG tomD gly4 
etc...
  2. or download this
    aesG_tomD = 1
aesG_gly4 = 1
...
tomD_gly4 = 2
tomD_phil = 2
gly4_phil = 2
  3. or download this
    my $tomD_phil;
etc...
...
  if (($_ =~ /tomD/) and ($_ =~ /phil/)) { $tomD_phil++ }
  etc...  
}