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  1. or download this
    for (my $j = 0; $j<=scalar(@sam2com);$j++){
    
    ...
    
    }#end of for $j @sam2com.
    
  2. or download this
    my ($n, $m, $o) = $s1 =~ /^(PD|WGA_PD)(\d+)(a|b|c)/;
    155       my ($n1, $m1, $o1) = $matSam->{ sample } =~ /^(PD|WGA_PD)(\d
    ++)(a|b|c)/;
    
    and comparing the $m ==$m1  and also 
    /(\w+)(a|b|c). and comparing the $1 of one sample with the other. But 
    +surely, I am making some stupid mistakes. as they still do come in th
    +e LOG file.