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#!/usr/bin/perl
...
my $t1 = Benchmark->new;
my $td = timediff($t1, $t0);
print "the code took:",timestr($td),"\n";

 Gm10   Glyma10g00200.1 CDS_11  8569    8705    -       2       2     
+  6       10      14      GAAGAACCAAAATCGCTGATTTTGAAAAATAGGGGGACTGAAT
+GTCTTGATTTGGAAATAGGGGGACCAAAATTGCGGATTGAGCATTATAGGGGACCAATAGTGTATTTTA
+GCCTTTATTTTATTTTGAATGTGTG
...
 Gm10   Glyma10g00210.1 CDS_4   18046   19077   -       12      42    
+  91      145     173     GCGCAACTGTGAAGCTTTAATGCTGCTTCAGAAGAATGGTTTA
+CGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACACTGTTTGGAGATGGGGAAGATGTTGCATGGCTT
+GAGAAAAATCATTTGGCTGACTGGGCAGAAGAAAAATTGGATGGAAGATTAGGAAATGAAACCTTTGAT
+GATTCTCAGTGGAGAGCAATTGCAATGGGTTTGAATAAAAAGAGGCCTGTATTGGTTATCCAAGGCCCT
+CCTGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGCATGTGCTGTTCAGCAAGGTGAAAGGGTT
+CTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTAGAAAAGCTTTCAAATGTTGGATTAAAT
+ATAGTGCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCTTTGGAAGAAATTGTA
+AATGCTAAGCTTGCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGAAAAGATCTAAGA
+CATTGTTTAAGGGATGATTCACTAGCTTCAGGCATACGCCAACTTCTGAAGCAACTGGGAAGGTCACTG
+AAGAAAAAGGAAAAGCAGACCGTAATTGAAGTTCTGTCTAGTGCTCAAGTTGTGGTTGCCACTAATACT
+GGAGCAGCTGACCCTTTGGTTCGAAGGCTAGATACCTTTGATTTGGTTGTCATAGATGAAGCGGGACAG
+GCAATTGAACCCTCTTGCTGGATTCCTATATTGCAGGGAAAGCGCTGCATTCTTGCTGGTGATCAATGC
+CAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGTTGGTCTAGGAATATCTCTACTGGAGAGA
+GCTGCAACTTTGCATGAAGGGATTCTCACCACTAGGTTAACAACACAATACCGTATGAATGATGCAATT
+GCTAGTTGGGCTTCAAAGGAGATGTACGGAGGATTATTGAAGTCCTCTGAGACTGTCTTTTCTCATCTT
+CTAGTAGACTCTCCTTTTGTTAA
 Gm10   Glyma10g00210.1 CDS_3   21109   21392   -       4       8     
+  30      42      52      GGACTTGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGA
+ACCACCGGTTACCACCAACCACTCTTTCACCTGGAGACATGGTTTGTGTGAGAACATATGACAGCATGG
+GTGCAATTACAACTTCTTGCATACAAGGATTTGTGAACAGTTTTGGGGATGATGGCTATAGTATTACAG
+TTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAGTGTGCGCATTGACC
+GTATTCAAGGACTGGCTGATACACTTACTTATGA
 Gm10   Glyma10g00210.1 CDS_2   24354   24662   -       9       13    
+  32      54      66      GCTCAGCATAGGGCGGTTGTGAGAAAGATAACGCAACCCAAGA
+GTGTCCAAGGCGTTTTAGGAATGGACTTCGAAAAGGTCAAAGCATTACAGCACAGGATTGACGAATTCA
+CCACCCATATGTCAGAACTACTCCGTATTGAAAGGGATGCTGAGTTGGAGTTTACTCAGGAGGAATTGG
+ATGCTGTTCCTAAACCAGATGATACTTCTGATTCTTCAAAAACGATTGATTTCTTGGTTAGCCATAGCC
+AGCCTCAACAAGAACTCTGCGACACCATTTGTAATTTAAACGCTATCAGTACCTCTACA

assembly        position        strand  class   mc      h
10      8691    +       CG      12      12
...
10      8718    -       CG      6       6
10      8984    +       CG      7       7
10      8991    +       CG      6       9

Chromosome      Gene    Feature Start   END     CG_count_by_C   CHG_co
+unt_by_C  CHH_count_by_C
 Gm10   Glyma10g00200.1 CDS_11  8569    8705    0.143   0.071   0.000
 Gm10   Glyma10g00200.1 CDS_9   8885    9079    0.040   0.000   0.000
 Gm10   Glyma10g0test.1 CDS_11  8569    8705    0.143   0.071   0.000