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my $procount2 = 1;

...
        }
    }
}

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$ perl readingframe.pl
Enter file name
...
string is CMAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVTECMAAAAAAAAAAAAAAAAAAAAAAAA
+AAAAAVT
string is AWPPPPPPPPPPPPPPPPPPPPPPPPPPPPP_LNAWPPPPPPPPPPPPPPPPPPPPPPPP
+PPPPP_L