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    my $maxBits=60; # hash reference - gave error message below
my %maxBits=60; # wrong
%maxBits=map {$_=>60} ; #?
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    Can't use string ("60") as a HASH ref while "strict refs" in use at fl
+agginscript_Flag1.pl line 58, <IN> line 1.
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    ############### read in blast table and parse #######
my $in_blast_tab=$ARGV[0];
...
        }
print OUT "\n";
}