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  1. or download this
    >perl -wMstrict -le
"$_ = qq{chr16\t28797601\t-\t0.777877};
...
 $site_info{$arr[0]{$arr[1]}}{'value'}  = $arr[3];
"
Can't use string ("16") as a HASH ref while "strict refs" in use at ..
+.
  2. or download this
    >perl -wMstrict -le
"use Data::Dump qw(dd);
...
 dd \%site_info;
"
{ 16 => { 28797601 => { strand => "-", value => 0.777877 } } }
  3. or download this
    >perl -wMstrict -le
"use Data::Dump qw(dd);
...
 dd \%site_info;
"
{ 16 => { 28797601 => { strand => "-", value => 0.777877 } } }
  4. or download this
    >perl -wMstrict -le
"use Data::Dump qw(dd);
...
 dd \%site_info;
"
{ 16 => { 28797601 => { strand => "-", value => 0.777877 } } }