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==> igenome.genes.onlyexons.uniq.gtf <== chr1 unknown exon1 815 4692 . - . gene_id "LOC +653635"; gene_name "LOC653635"; transcript_id "XR_017611.2"; tss_id " +TSS10265"; ... chr1 unknown exon23 133719 134341 . - . gene_i +d "LOC729737"; gene_name "LOC729737"; p_id "P4208"; transcript_id "XM +_001133863.1"; tss_id "TSS9238"; chr1 unknown exon24 217633 218641 . - . gene_i +d "LOC728481"; gene_name "LOC728481"; transcript_id "XR_015292.2"; ts +s_id "TSS13278"; chr1 unknown exon25 313133 319752 . + . gene_i +d "LOC100132287"; gene_name "LOC100132287"; transcript_id "XR_039254. +1"; tss_id "TSS18904";
#!/usr/bin/perl -w ... my $bed = join "\t", @gtf[0,3,4,8]; print "$bed\n"; }