in reply to Re: Genome UV Mutation Script -- Critique
in thread Genome UV Mutation Script -- Critique

Be aware. Bio::SeqIO may be robust, but unless thing have changed in the last 6 months, it is very, very (ludicrously) slow.


Examine what is said, not who speaks -- Silence betokens consent -- Love the truth but pardon error.
"Science is about questioning the status quo. Questioning authority".
In the absence of evidence, opinion is indistinguishable from prejudice.
"Too many [] have been sedated by an oppressive environment of political correctness and risk aversion."
  • Comment on Re^2: Genome UV Mutation Script -- Critique

Replies are listed 'Best First'.
Re^3: Genome UV Mutation Script -- Critique
by lima1 (Curate) on Mar 15, 2007 at 09:20 UTC
    thats not really an issue with this small prokaryotic genomes.

    Update: i was curious and tried this with Bioperl. It is indeed MUCH slower. Thanks for the hint.