in reply to How To Parse a BLAST data file

This is where I would recommend using bioperl. You can find the modules here: http://bioperl.org/wiki/Main_Page. Specific examples for parsing blast searches are here: http://bioperl.org/wiki/HOWTO:SearchIO#Using_SearchIO. If you don't have administrative permissions on the machine you are using, you can clone the git repository and export the location to $PERL5LIB.


Bioinformatics