in reply to Re^3: Reverse Complement
in thread Reverse Complement

Can you please explain this in your comment?

and with the sample input you want, e.g.: perl -wMstrict -l your_file.pl GGGGaaaaaaCatttatatat atatataaatttttATtcccc

Replies are listed 'Best First'.
Re^5: Reverse Complement
by AnomalousMonk (Archbishop) on Jun 30, 2013 at 23:00 UTC

    The command line invocation example
        perl -wMstrict -l  your_file.pl  GGGGaaaaaaCatttatatat  atatataaatttttATtcccc
    was intended to show how to invoke a source code file (prepared as described in previous replies) and followed by two sequence strings  GGGGaaaaaaCatttatatat and  atatataaatttttATtcccc to be compared for reverse-complementarity. (BTW: I've tried this exact command line and it works.)