Re: Counting amino acids

Ah, you want to modify this script?

If you don't want percentages, you can just modify the last $count line:

from

$count{$a}= sprintf("%0.1f",($count{$a}/length($seq{$k}))*100);
[download]

to this:

$count{$a}= sprintf("%0.6f",($count{$a}/length($seq{$k})));
[download]

Comment on Re: Counting amino acids Select or Download Code

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Re^2: Counting amino acids by yuvraj_ghaly (Sexton) on Jul 19, 2013 at 07:14 UTC
see the problem is I don't want any decimal. This code do division calculation between amino acid counted to overall length of sequence. I just require the amino acid counted.	[reply]
Re^3: Counting amino acids by mtmcc (Hermit) on Jul 19, 2013 at 07:19 UTC
Well then replace the line I mentioned above with: `count{$a};`	[reply] [d/l]
Re^4: Counting amino acids by yuvraj_ghaly (Sexton) on Jul 19, 2013 at 07:24 UTC
I have sorted out the problem I modify this code `$count{$a}= sprintf("%0.6f",($count{$a}/length($seq{$k})));` to this code `$count{$a}=length($seq{$k});` also I have to modify this code `my @aa= qw(A R N D C Q E G H I L K M F P S T W Y V);` to this code `my @aa= qw(A);`	[reply] [d/l] [select]