in reply to Re: calculation of charged amino acids
in thread calculation of charged amino acids

somehow it is calculating only one sequence.

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Re^3: calculation of charged amino acids
by mtmcc (Hermit) on Jul 23, 2013 at 11:11 UTC
    When I run that program on these fasta sequences:

    >DROTME_HH_Q02936 
    MRHIAHTQRCLSRLTSLVALLLIVLPMVFSPAHSCGPGRGLGRHRARNLY
    PLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDE
    
    >DROME_HH_Q02937 
    MRHIAHTQRCLSRLTSLVALLLIVLPMVFSPAHSCGPGRGLGRHRARNLY
    PLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEE
    GTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLTTTTTTESWDEDYHHGQ
    YEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSDSS
    ESLH
    
    >DROME_HH_Q02938 
    GTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLTTTTTTESWDEDYHHGQ
    YEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSDSS
    ESLH
    

    I get this output:

    Name: >DROME_HH_Q02937 
    Number of acidic amino acids:33
    Number of basic amino acids:35
    Number of neutral amino acids:33
    
    Name: >DROME_HH_Q02938 
    Number of acidic amino acids:18
    Number of basic amino acids:17
    Number of neutral amino acids:18
    
    Name: >DROTME_HH_Q02936 
    Number of acidic amino acids:14
    Number of basic amino acids:18
    Number of neutral amino acids:14
    

    The fasta tags for each protein must be unique.

      are these fasta sequences in one file file or different???

      Paste all these sequences in one file, save in fasta format and then run the program. You will see the problem

        They're all in one file. I don't see the problem I'm afraid. If you like though, you could tell me what problem you're having.
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Re^3: calculation of charged amino acids
by yuvraj_ghaly (Sexton) on Jul 24, 2013 at 04:50 UTC

    so u used the same code which I input