RNA.pm module loading problem

ashprog has asked for the wisdom of the Perl Monks concerning the following question:

Hello all, am trying to run a perl code using a module "RNA.pm" but not able to compile; terminal is showing the error as

Can't locate loadable object for module RNA in @INC (@INC contains: /home/ashish/perl5/perlbrew/perls/perl-5.16.0/lib/site_perl/5.16.0/x86_64-linux /home/ashish/perl5/perlbrew/perls/perl-5.16.0/lib/site_perl/5.16.0 /home/ashish/perl5/perlbrew/perls/perl-5.16.0/lib/5.16.0/x86_64-linux /home/ashish/perl5/perlbrew/perls/perl-5.16.0/lib/5.16.0 .) at RNA.pm line 11. Compilation failed in require at vienna.pl line 11

I am using ubuntu 12.04.

Comment on RNA.pm module loading problem

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Re: RNA.pm module loading problem by toolic (Bishop) on Sep 04, 2013 at 17:12 UTC
You should show us the first 11 lines of your RNA.pm and vienna.pl files.	[reply]
Re^2: RNA.pm module loading problem by ashprog (Initiate) on Sep 07, 2013 at 13:47 UTC
#!/usr/bin/perl/ use warnings; use strict; use Class::Struct; use RNA; This are the first 11 lines of my vienna.pl file and the compilation stops at the "use RNA" line	[reply]
Re^3: RNA.pm module loading problem by ashprog (Initiate) on Sep 07, 2013 at 13:52 UTC
http://web.mit.edu/seven/src/ViennaRNA-1.5/Perl/RNA.pm this is the link to RNA.pm file thanks	[reply]
Re^4: RNA.pm module loading problem by syphilis (Archbishop) on Sep 07, 2013 at 14:42 UTC
Re: RNA.pm module loading problem by runrig (Abbot) on Sep 04, 2013 at 17:18 UTC
What directory is RNA.pm in? You probably need to use a 'use lib' statement or set the PERL5LIB environment variable to tell perl where that library is. Or you need to install the RNA library.	[reply]
Re^2: RNA.pm module loading problem by Anonymous Monk on May 28, 2020 at 03:12 UTC
Hi, my name is Qian, and I am experiencing a similar problem here. I can see that my RNA.pm is in this directory: `/share/apps/ViennaRNA-2.1.7/compile-install/lib/site_perl/5.14.2/x86_64-linux-thread-multi/RNA.pm` I have posted a more detailed question on the StackOverflow if that helps: https://stackoverflow.com/questions/62050749/viennarna-packages-perl-module-rna-pm-is-required Can you please elaborate more on "use a 'use lib' statement or set the PERL5LIB environment variable to tell perl where that library is. Or you need to install the RNA library." I don't fully understand how I should do that. Thanks in advance for any help and sorry if this is a very basic question!	[reply] [d/l]
Re^3: RNA.pm module loading problem by hippo (Archbishop) on May 28, 2020 at 09:25 UTC
The FAQ How do I add a directory to my include path (@INC) at runtime? covers both use lib and PERL5LIB as mechanisms for this.	[reply]
Re: RNA.pm module loading problem by CountZero (Bishop) on Sep 04, 2013 at 19:37 UTC
Do you mean Bio::Phylo::Matrices::Datatype::Rna? If so, how did you install `RNA.pm`? CountZero A program should be light and agile, its subroutines connected like a string of pearls. The spirit and intent of the program should be retained throughout. There should be neither too little or too much, neither needless loops nor useless variables, neither lack of structure nor overwhelming rigidity." - The Tao of Programming, 4.1 - Geoffrey James My blog: Imperial Deltronics	[reply] [d/l]