Thank you. So I did comment it out and put the print statements in as below but i got an internal server error which I guess means that there is something wrong with the html file?? Below is the CGI script. Thank you so much.
#!/usr/bin/perl -w
use strict;
use DBI;
use CGI;
my $query = new CGI;
print $query->header();
#my $my_database = "TrypSnoDB";
#my $localhost = "localhost";
#my $dsn = "DBI:mysql:$my_database:$localhost";
#my $db_user_name = "adrian";
#my $db_password = "temp_pass";
#my $dbh = DBI->connect("DBI:mysql:database=TrypSnoDB;host=localhost;m
+ysql_socket=/private/software/mysql/mysql.sock","adrian","temp_pass",
+ {'RaiseError' => 1});
if ($query->param('submit1')){
my $family = $query->param('family');
my $TB = $query->param('TB');
my $LM = $query->param('LM');
my $HS = $query->param('HS');
my $SC = $query->param('SC');
my $AT = $query->param('AT');
my $db_query;
print qq(TB: $TB<br>;
print qq(LM: $LM)<br>;
print qq(HS: $HS)<br>;
print qq(SC: $SC)<br>;
print qq(AT: $AT)<br>;
}
exit(0);
if ($family eq "ALL") {
$family = "'C/D' or ST.family='H/ACA'"
}
else {
$family = "'$family'";
}
$db_query = "SELECT ST.sno_name,HT.homolog_name FROM sno_Table ST,
+Homolog_Table HT,sno_Homologs SH,Organism O
WHERE ST.sno_id=SH.sno_id AND SH.homolog_id=HT.homolog_id AND HT.org_i
+d=O.org_id and (ST.family=$family) and
O.organism='$TB'";
my $sth = $dbh->prepare($db_query);
$sth->execute();
my$total = $sth->rows;
print "<table border=1>\n
<tr>
<th>snoRNA</th>\n
<th>Homolog</th>\n
</tr>\n";
while (my@row = $sth->fetchrow_array()){
my$sno_name = $row[0];
my$homolog_name = $row[1];
print "<tr>\n<td>$sno_name</d><td>$homolog_name</td></tr>\n";
}
print "<tr>
<th>TOTAL</th>\n
<th>$total</th>\n
</tr>\n";
print "</table>";
}
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