I see a connection between:
>comp10003_c0_seq1 41
and
>comp10003_c0_seq1 len=166 path=748:0-22 1004:23-46 2527:47-165_weight=41 AAGTAGCCTATGCGCTACAGTAAGAAAGACAGGTGAAAAAATGGAAGTAAAACAATTAGA TGACTACTTTGGATATACAGAAAAGGGCAGTTCCTTAGAGGGGGAATTACGAGCAGGACT AACGACATTCTTGACAATGGCGTACATTCTGTTTGTGAACCCAGAC
The "weight of 41" seems to matter.
I don't see the algorithm to reach the result?