in reply to Re^4: A program to extract the reads and modify the seq ID
in thread A program to extract the reads and modify the seq ID

Ah, I should have read the description before diving into code. :-)

But yes, my approach when giving code is not to give everything, but get OP to fix (some remaining) issues - I've found that learning is better reinforced that way.

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Re^6: A program to extract the reads and modify the seq ID
by Kenosis (Priest) on Feb 26, 2014 at 06:17 UTC

    Well, as mentioned, your bullet points were very good and should go a long way toward assisting the OP.