Re^3: Adding missing values into a hash

Do you have other lines in the file apart from those like
##INFO=<ID=AA, and 1 AA=1;AB=2;AC=3 ? Blank lines for example.

poj

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Re^4: Adding missing values into a hash by Biopolete (Initiate) on Jun 20, 2014 at 08:16 UTC
No, I don't have any other lines in the file :( I have the same problem if I use your complete script with: __DATA__ ##INFO=<ID=AA, ##INFO=<ID=AB, ##INFO=<ID=AC, 1 AA=1;AB=2;AC=3 2 AA=2;AB=2 3 AA=5;AB=1;AC=1 I only obtain "NA" values in CVS file	[reply]
Re^5: Adding missing values into a hash by poj (Abbot) on Jun 20, 2014 at 08:48 UTC
Check you have a tab character between between `1 and AA=1, 2 and AA=2, 3 and AA=5`, not spaces poj	[reply] [d/l]