Re: match pattern from two different file

any chance you could put the file contents in code tags? That might make this post readable... :-)

Update Reflecting on the code just a bit, have you looked at any of the perl docs?

if (whatever) {
      do something;
   } else {
      do the_other;
}
[download]

...the majority is always wrong, and always the last to know about it...

Insanity: Doing the same thing over and over again and expecting different results...

A solution is nothing more than a clearly stated problem...otherwise, the problem is not a problem, it is a facct

wjw

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Re^2: match pattern from two different file by Anonymous Monk on Jun 20, 2014 at 06:23 UTC
file1 contains `LOC_Os01g01010.1 3017 : PAS 2993,3017 : AGTAAA AAATGGAGGAATTCTGCCA LOC_Os01g01010.2 2218 : uORF 7,129 : ATG AAGAAGACGAGACGACGACTTCCCCACTA +GGAAACACGACGGAGGCGGAGATGATC` [download] and file2 contains `LOC_Os01g01010.1 : PS51373 HIPIP High potential iron-sulfur proteins f +amily profile. 2139 - 2208 AATGATTTATCATGTGAGGTGAAAGA-----AGAGCACCGGG +TGAACAGTTACACAAGAA L=-1 GAAAGTCCAAAAGCA LOC_Os01g01010.2 : PS00022 EGF_1 EGF-like domain signature 1. 298 - 30 +9 CtCccTtcGTtC L=(-1)` [download] I am trying to retrieve "LOC_Os01g01010*"(as whole file contains variation of naming but LOC_Os01g remains constant) yes, i did write once by giving condition with and that also didn't produce any result actually i have tried writing in so many ways, that it become all jumbled and now i don't know what should do	[reply] [d/l] [select]

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Re^2: match pattern from two different file
by Anonymous Monk on Jun 20, 2014 at 06:23 UTC

file1 contains

LOC_Os01g01010.1 3017 : PAS 2993,3017 : AGTAAA AAATGGAGGAATTCTGCCA 
LOC_Os01g01010.2 2218 : uORF 7,129 : ATG AAGAAGACGAGACGACGACTTCCCCACTA
+GGAAACACGACGGAGGCGGAGATGATC
[download]

and file2 contains

LOC_Os01g01010.1 : PS51373 HIPIP High potential iron-sulfur proteins f
+amily profile. 2139 - 2208 AATGATTTATCATGTGAGGTGAAAGA-----AGAGCACCGGG
+TGAACAGTTACACAAGAA L=-1 GAAAGTCCAAAAGCA
LOC_Os01g01010.2 : PS00022 EGF_1 EGF-like domain signature 1. 298 - 30
+9 CtCccTtcGTtC L=(-1)
[download]

I am trying to retrieve "LOC_Os01g01010*"(as whole file contains variation of naming but LOC_Os01g remains constant)

yes, i did write once by giving condition with and that also didn't produce any result
actually i have tried writing in so many ways, that it become all jumbled and now i don't know what should do

[reply]
[d/l]
[select]