Re^6: Problem computing GC content

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Re^7: Problem computing GC content by AppleFritter (Vicar) on Jul 13, 2014 at 21:56 UTC
Perhaps. Alternatively, can you share some example data? I've been using the following to check if what I wrote worked: `. ignored > someidentifier . ignored ATATATATGC . ignored > someidentifier2 . ignored GCGCGCGCAT` [download] This yields: $ perl 1093455.pl > someidentifier, 20 > someidentifier2, 80 $ [download] Which is what I expected. (Side note -- I don't know anything about bioinformatics, or how FASTA files are usually structured, so this may well be a nonsensical file; I merely inferred what it might look like from the script you posted yourself.)	[reply] [d/l] [select]

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Re^7: Problem computing GC content
by AppleFritter (Vicar) on Jul 13, 2014 at 21:56 UTC

Perhaps. Alternatively, can you share some example data? I've been using the following to check if what I wrote worked:

. ignored
> someidentifier
. ignored
ATATATATGC
. ignored
> someidentifier2
. ignored
GCGCGCGCAT
[download]

This yields:

$ perl 1093455.pl
> someidentifier, 20
> someidentifier2, 80
$
[download]

Which is what I expected.

(Side note -- I don't know anything about bioinformatics, or how FASTA files are usually structured, so this may well be a nonsensical file; I merely inferred what it might look like from the script you posted yourself.)

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