in reply to Re^3: While problem
in thread While problem
The error is about "words" and "words2". The program needs global declaration i think so (i did it at first row) but i don't know the way to do it. Thanksuse strict; use warnings; use Data::Dumper; my $mio2; my $mio; my $line; my $line2; my $words; my $words2; my $i=0; my %go_accession_hash=(); open (FILE, "/Users/Pabli/Desktop/gene_association.goa_human"); open (FILE2, "/Users/Pabli/Desktop/go3.obo"); while(<FILE>) { my @array_with_all_fields=split(/\t/); if ($array_with_all_fields[2] eq "TP53"){ $mio=$array_with_all_fields[4]; open my $out_file, '>>', 'myoutputfilename.txt' or die "$!"; #print "".$mio."\n"; print $out_file $mio; # print to file } #print "".$mio."\n"; #} #%go_accession_hash=($mio,''); #my @test2= keys %go_accession_hash; #print "".$test2[0]."\n"; #print "".$mio."\n"; } open (FILE3, "/Users/Pabli/Documents/workspace/PerlProva/myoutputfilen +ame.txt"); while($line=<FILE2>){ $words2 = split(" ",$line); print "$words2[1]\n"; $i=2; while($line2=<FILE3>){ $i = $i - 1; if ($i >= 0) { $words = split(" ",$line2); #print $words[0]."\n"; } $mio2=$words[0]; #print "$words2[1]\n"; #print $words[0]."\n"; } #print "$words2[1]\n"; #print $words[0]."\n"; #$line= split(/\s+/); #if ($words2[0] eq "id:") { #$mio4=$words2[1]; #print $mio4."\n"; # } #elsif ($words2[0] eq "name:"){ #if ($mio4 == $mio2){ #print "name: ".$words2[1]."\n"; #} #} #} } close FILE; close FILE2; close FILE3;
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Re^5: While problem
by Corion (Patriarch) on Oct 27, 2014 at 10:38 UTC | |
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Re^5: While problem
by Loops (Curate) on Oct 27, 2014 at 10:50 UTC |