Re: Find a sequence in a multifasta files and motifs

Are you working in a government lab on alien DNA? I mean, shouldnt a fasta file contain A;G;C;T instead of A;C;D;E;F;G;H;I;K;L;M;N;P;Q;R;S;T;V;W;Y?

Edit: Thanks for the explanations, but you kinda ruined the fun.

holli

You can lead your users to water, but alas, you cannot drown them.

Comment on Re: Find a sequence in a multifasta files and motifs Download Code

Replies are listed 'Best First'.
Re^2: Find a sequence in a multifasta files and motifs by kcott (Archbishop) on Jun 28, 2019 at 06:41 UTC
G'day holli, Acually, those look like amino acids. `MKIKLV...` = Methionine-Lysine-Isoleucine-Lysine-Leucine-Valine-... See "FASTA format: Sequence representation". — Ken	[reply] [d/l]
Re^2: Find a sequence in a multifasta files and motifs by choroba (Cardinal) on Jun 28, 2019 at 08:18 UTC
Translating RNA into Protein `map{substr$_->[0],$_->[1]\|\|0,1}[\\|\|{},3],[[]],[ref qr-1,-,-1],[{}],[sub{}^ARGV,3]`	[reply] [d/l]
Re^2: Find a sequence in a multifasta files and motifs by AnomalousMonk (Archbishop) on Jun 27, 2019 at 21:42 UTC
I'm not a bio-guy, but I think this is IUPAC notation for Earthian DNA. Give a man a fish: `<%-{-{-{-<`	[reply] [d/l]
Re^2: Find a sequence in a multifasta files and motifs by rebkirl (Acolyte) on Jun 28, 2019 at 10:05 UTC
https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=BlastHelp	[reply]