Re: Filtering matches of near-perfect-matched DNA sequence pairs

It sounds like you could adapt one I put together a couple years ago: Re^2: Comparing a large set of DNA sequences.

When your only tool is a hammer, all problems look like your thumb.

Comment on Re: Filtering matches of near-perfect-matched DNA sequence pairs

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Re^2: Filtering matches of near-perfect-matched DNA sequence pairs by onlyIDleft (Scribe) on Mar 13, 2015 at 02:37 UTC
Hi roboticus: Thanks for your reply. That posting mentions that it might not work for # mismatches > 1 If that statement is indeed true, then it wont help with case c. listed in my OP. Do you care to comment please? Does BrowserUK's incomplete solution, based on your OP there, seem like a viable option for further modification?	[reply]
Re^3: Filtering matches of near-perfect-matched DNA sequence pairs by roboticus (Chancellor) on Mar 13, 2015 at 10:03 UTC
onlyIDleft: I don't see why it won't work with case c. Perhaps I don't understand exactly what you mean. Can you provide a bit more detail or some examples so I can see what you're meaning? If so, I may be able to tweak things up a bit. (It would be best to have a few examples of each of the cases, so we can cover all the corners.) ...roboticus When your only tool is a hammer, all problems look like your thumb.	[reply]