Re: Trying to get intergenic sequences using BioPerl

Tip #2 from the Basic debugging checklist: print. Print more variable values before that line to try to determine the root cause:

print "end=$end,start=$start\n";
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Comment on Re: Trying to get intergenic sequences using BioPerl Download Code

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Re^2: Trying to get intergenic sequences using BioPerl by Sosi (Sexton) on Jul 27, 2015 at 11:00 UTC
I know, that's why I have that `dd ($gbfffile,$pt,"\$two\[0\]:","endi:$endi","\$two\[1\]:","starti:$starti","after:","end:$end","start:$start",$subseq);`there, but I see nothing wrong with $start or $end	[reply] [d/l]