Re: Trypsin digestion

A quick search of MetaCPAN turns up a few modules that are happy to deal with FASTA files. The first one I see is Bio::SeqReader::Fasta, which may help you out.

Have a read through these choices, and see if some of the examples help you out.

Alex / talexb / Toronto

Thanks PJ. We owe you so much. Groklaw -- RIP -- 2003 to 2013.

Comment on Re: Trypsin digestion

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Re^2: Trypsin digestion by BioUs2003 (Initiate) on Oct 22, 2015 at 17:01 UTC
Thank you, I will check it out	[reply]
Re^3: Trypsin digestion by AnomalousMonk (Archbishop) on Oct 22, 2015 at 21:11 UTC
Also check out davido's personal node for a link to his "Perl Regular Expression Tester". This will allow you to easily see the effect of a given regex upon a given string, although as has been posted elsewhere, this seems to be the part of your problem you have the best handle on. Give a man a fish: `<%-{-{-{-<`	[reply] [d/l]