in reply to Re: concatenate/stitch multiple GZip fastq files and output combined gzip file
in thread concatenate/stitch multiple GZip fastq files and output combined gzip file

Thanks a lot for your replies - The script works for me now :
#!/usr/bin/perl use strict; use warnings; use File::Slurp; use IO::Compress::Gzip qw(gzip $GzipError); my @data = read_file('./File_list.txt'); my $out = "./test.txt"; foreach my $data_file (@data) { chomp($data_file); system("zcat $data_file >> $out"); } my $outzip = "./test.gz"; gzip $out => $outzip;
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