Re^4: Error opening file handle within while loop

Presumably you fixed this error also

my $mafBlock = qx(maf_parse --start $start --end $end $maf);
print OUT1 "$mafBlock1\n"; # << should be $maxBlock
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poj

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Re^5: Error opening file handle within while loop by rjc33 (Sexton) on Feb 10, 2016 at 13:11 UTC
Hi, yes well spotted and apologies, this has been fixed. My original code contained slightly different variable names and I changed them to post here to try and simplify things, seems I made a bigger problem though by creating mistakes!	[reply]