Re^3: Can't run Clustalw through Bioperl

Are you sure the program is installed in the path you are specifying, and it's executable? What is the output of:

C:\> where clustalw.exe
[download]

? What happens if you try to run it by hand in its folder?

( Disclaimer: I don't use MS Windows, but I believe that's the command... )

The way forward always starts with a minimal test.

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Re^4: Can't run Clustalw through Bioperl by dimitris852 (Acolyte) on Mar 14, 2016 at 03:30 UTC
--->INFO: Could not find files for the given pattern(s). But i can see it. Its already installed on my computer and the Clusterw.exe is on this specific path. really confused...	[reply]
Re^5: Can't run Clustalw through Bioperl by 1nickt (Canon) on Mar 14, 2016 at 04:00 UTC
If you change into the folder where the file lives, can you execute it from the command line? If so, what does it tell you? The way forward always starts with a minimal test.	[reply]
Re^6: Can't run Clustalw through Bioperl by dimitris852 (Acolyte) on Mar 14, 2016 at 04:37 UTC
---->System couldn't file Clustalw But I can double click on it and use it. Please excuse me for all this confusion, but it makes no sense to me.	[reply]
Re^7: Can't run Clustalw through Bioperl by Marshall (Canon) on Mar 14, 2016 at 05:25 UTC
Re^8: Can't run Clustalw through Bioperl by GrandFather (Saint) on Mar 14, 2016 at 05:35 UTC
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Re^7: Can't run Clustalw through Bioperl by 1nickt (Canon) on Mar 14, 2016 at 05:05 UTC
Re^7: Can't run Clustalw through Bioperl by poj (Abbot) on Mar 14, 2016 at 17:13 UTC
Re^8: Can't run Clustalw through Bioperl by dimitris852 (Acolyte) on Mar 14, 2016 at 20:21 UTC
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