Re^5: how to output the final Tree into a file?

That's right. Did you try:

while ( my $tree = $treeout->next_tree ) {
    for my $node ( $tree->get_nodes ) {
        printf $fh "id: %s bootstrap: %s\n", $node->id || '', $node->b
+ootstrap || '', "\n";
    }
}
[download]

The way forward always starts with a minimal test.

Comment on Re^5: how to output the final Tree into a file? Download Code