The third version you used (shown blow) will never work - that is telling IO:Compress::Zip to use the values for the variables $atime, $mtime and $ctime in the extended timestamp field in the zip file. Those variable have no value, so that will screw up the extended timestamp in the zip file.

$  perl -M'IO::Compress::Zip qw(zip)' -e ' zip "abc" => "abc.zip", exT
ime => [$atime, $mtime, $ctime] '
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Perhaps you are running an ancient version of IO::Compress::Zip that predates the change where extended timestamp support was added. What version do you get when you run this?

$ perl -M'IO::Compress::Zip' -e 'print "$IO::Compress::Zip::VERSION\n"
+'
2.061
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Also, if you have zipinfo installed, that can tell if the zip archive contains the extended timestamp. In the output below the lines "file last modified on (UT extra field modtime)" show that this archive does have the more accurate timestamp.

$ perl -M'IO::Compress::Zip qw(zip)' -e ' zip "abc" => "abc.zip"
$ zipinfo -v abc.zip 
Archive:  abc.zip
There is no zipfile comment.

End-of-central-directory record:
-------------------------------

  Zip archive file size:                       178 (00000000000000B2h)
  Actual end-cent-dir record offset:           156 (000000000000009Ch)
  Expected end-cent-dir record offset:         156 (000000000000009Ch)
  (based on the length of the central directory and its expected offse
+t)

  This zipfile constitutes the sole disk of a single-part archive; its
  central directory contains 1 entry.
  The central directory is 73 (0000000000000049h) bytes long,
  and its (expected) offset in bytes from the beginning of the zipfile
  is 83 (0000000000000053h).


Central directory entry #1:
---------------------------

  abc

  offset of local header from start of archive:   0
                                                  (0000000000000000h) 
+bytes
  file system or operating system of origin:      Unix
  version of encoding software:                   2.0
  minimum file system compatibility required:     MS-DOS, OS/2 or NT F
+AT
  minimum software version required to extract:   2.0
  compression method:                             deflated
  compression sub-type (deflation):               normal
  file security status:                           not encrypted
  extended local header:                          yes
  file last modified on (DOS date/time):          2017 Jan 11 10:53:06
  file last modified on (UT extra field modtime): 2017 Jan 11 10:53:07
+ local
  file last modified on (UT extra field modtime): 2017 Jan 11 10:53:07
+ UTC
  32-bit CRC value (hex):                         4788814e
  compressed size:                                6 bytes
  uncompressed size:                              4 bytes
  length of filename:                             3 characters
  length of extra field:                          24 bytes
  length of file comment:                         0 characters
  disk number on which file begins:               disk 1
  apparent file type:                             text
  Unix file attributes (100644 octal):            -rw-r--r--
  MS-DOS file attributes (00 hex):                none

  The central-directory extra field contains:
  - A subfield with ID 0x5455 (universal time) and 5 data bytes.
    The local extra field has UTC/GMT modification time.
  - A subfield with ID 0x7875 (Unix UID/GID (any size)) and 11 data by
+tes:
    01 04 5b 24 00 00 04 08 52 00 00.

  There is no file comment.
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