Can you run the script from the command line?

Try to run it as

./indexaf.cgi
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From the correct directory that contains indexaf.cgi.

This line looks very suspicious to me:

#!/Path/to/New/Perl/Package -T
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This does not point to a Perl interpreter. It should maybe look like:

#!/Path/to/New/Perl/Package/bin/perl -T
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... or something like that.