Re^3: Problems with cpanm

Replies are listed 'Best First'.
Re^4: Problems with cpanm by Siberian_monk29 (Novice) on Mar 15, 2019 at 15:01 UTC
tried to install the module `cpan[1]> Getopt::Long` and I am getting this: `Catching error: "Can't locate object method \"Long\" via package \"Ge +topt\" at /usr/share/perl/5.22/CPAN.pm line 375, <FIN> line 1.\cJ" at + /usr/share/perl/5.22/CPAN.pm line 391, <FIN> line 1. CPAN::shell() called at /usr/share/perl/5.22/App/Cpan.pm line 395 App::Cpan::_process_options("App::Cpan") called at /usr/share/perl +/5.22/App/Cpan.pm line 492 App::Cpan::run("App::Cpan") called at /usr/bin/cpan line 12` [download]	[reply] [d/l] [select]
Re^5: Problems with cpanm by Corion (Patriarch) on Mar 15, 2019 at 15:17 UTC
The command from within the `cpan` tool is: `install Getopt::Long` [download] ... but Getopt::Long should come distributed with your Perl anyway. If your vendor did not distribute this module with Perl, they likely offer a separate package which brings in everything that makes the Perl distribution complete and compliant with the license.	[reply] [d/l] [select]
Re^5: Problems with cpanm by marto (Cardinal) on Mar 15, 2019 at 15:14 UTC
Give me a moment, I'm just setting up the non perl dependencies for this tool, I can see some further issues. I'll reply again shortly. Update: in the short term, just: `cd ext_tools ./cpanm Getopt::Long::Subcommand ./cpanm Bio::DB::HTS::Tabix ./cpanm Bio::SeqIO` [download]	[reply] [d/l]
Re^6: Problems with cpanm by Siberian_monk29 (Novice) on Mar 15, 2019 at 17:14 UTC
Thank you The first and the third command gave me the following: `Getopt::Long::Subcommand is up to date. (0.103) Bio::SeqIO is up to date. (1.7.5)` [download] And the second comand went through a installation procedure.	[reply] [d/l]
Re^4: Problems with cpanm by Siberian_monk29 (Novice) on Mar 15, 2019 at 14:48 UTC
But now I am getting this issue Installation `Perl module Getopt::Long::Subcommand failed. Please install manually` How can do it manually?	[reply] [d/l]