in reply to bioperl help?
where $obj is undefined, or an otherwise plain scalar. Now, I expect you aren't working on TextResultWriter.pm, but on some file that calls (directly, or indirectly) a function in TextResultWriter.pm that contains this line. Then it's very well possible you aren't passing the appropriate arguments. Check your arguments. Make sure you pass objects where the function expects objects.$obj -> algorithm ();
But of course, this is mostly guessing. You aren't showing any code.
Abigail
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