Looks you managed to insert a strange character (that only looks like a dash) before the 'd' instead of a simple dash '-'.
So this has really nothing to do with perl; it's just a copy-and-paste error.
Try to make rpsblast run without perl first.
In reply to Re: Running rpsblast on all files in directory, using perl
by erix
in thread Running rpsblast on all files in directory, using perl
by MoniqueLT
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