data = scan()$data
Not, this is not how R works, try something like
data <- scan(file =$filehandle)
And you need also avoit to mix the headers with the data
my $data =
"subj1 high 13
subj1 low 15
subj2 high 12
subj2 low 15
subj3 high 16
subj3 low 17
subj4 high 11
subj4 low 18
";
my $R = Statistics::R->new();
$R->startR;
R->send(qq`data <- read.table($data, header = false), sep = "")`);
R->send(qq`names(data) <- c("Subj","Cond","Count")`);
R->send(qq`attach(data)`);
R->send(qq`$Cond <- as.factor($Cond)`);
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