Permission denied was solved by enabling keyboard interactive login. ssh_args was also passed to the sftp login as follows
## SFTP Connection
my %args = (user => $user,
password => $pass,
debug => 1,
ssh_args => { interactive => 1,
identity_files =>
[ "/usr2/username/.ssh/id_rsa"],
protocol=>'2,1'
}
);
my $sftp = Net::SFTP->new($host, %args) or
do
{
print "Unable to connect to $name\n";
print "Aborting Connection\n";
goto END;
};
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