So, you have output from a variant caller or database. Have you had to parse data from the bot previously, or is this a one-off file? Some ideas:

1) Check the API documentation to see if it gives any hints.
2) Check if the output file was made on a Mac. You can try setting $/ = "\12"; at the beginning of the script to test (it changes the delimiter from \n to \r).

Bioinformatics

In reply to Re: Very weird things when printing (may be an encoding issue?) by bioinformatics
in thread Very weird things when printing (may be an encoding issue?) by dottornomade

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