You can just chop off the pipe and anything thereafter before you print:

    while (<>) {
        s/^>.+?\K\|.*$//;
        print;
    }

[download]

If the non-matching lines are quite long but the "or1" tags are short, it will speed things up to specify a quantifier on the substitution (Edit: disregard this optimization if non-matching lines never start with '>'):

    s/^>.{1,10}\K\|.*$//; # Tag is between 1..10 chars
use strict; use warnings; omitted for brevity.

In reply to Re: trim header lines in files by rjt
in thread trim header lines in files by utpalmtbi

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