You don't trust it because it's simple?!
Well, I guess you still don't have that much experience, but here's a universal truth: the best code is usually the most simple. Usually.
Anyways, I don't know exactly how your program works, but I would first suggest to use you friend, Devel::Dprof.
( I'm not sure what you didn't understand about the output from Devel::Dprof, but it's pretty straight forward, I think.... It's just shows in order which subroutines were accessed most frequently )
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