Adding command line switches (eg warnings) will fix a DOS line ending problem but won't fix a multiple Perl version issue. Therefore it is not a multiple Perl version issue.
But note that using od is overkill. On Linux if you vi the file, you will see carriage returns as ^M. Also note that rather than guessing where an alternate Perl version might be, you are better off running:
which perl
or by running the script:
use Config;
print Config::myconfig();
in various ways.
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