FTP is for transfering files, it has no ability to compare them. Just download the file, uncompress it and compare it to what you have locally.
Update: Perhaps they have some API you could use, I'm not clear on exactly what your goal is. http://www.bioperl.org/wiki/UCSC_tools, Tutorials -> Perl and Bioinformatics, BioPerl.
In reply to Re: Retrieve SNP information from UCSC genome browser
by marto
in thread Retrieve SNP information from UCSC genome browser
by ammalu89
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