Thanks for the reply! I have a list (technically a spreadsheet that I made a list) of bacterial genes from an RNASeq sequencing run. I've isolated a sublist of strings that correspond to gene names that I am interested in investigating further, but I need to get information on them from the GenBank file, nothing too elaborate, basically Gene Name, GeneBank ID or GeneID, and a brief description. Initially I set up a simple script to type in the name to search (see the commented out STDIN section), which matched the pattern to the string in the GeneBank file-I just copied and pasted the lines I needed-but when I realized there were way too many for this to be feasible, I tried the current approach of inputing the list of genes from the RNASeq run as search patterns to match.


In reply to Re^2: Need Help with Maybe a Regex Issue by sharkbait
in thread Need Help with Maybe a Regex Issue by sharkbait

Title:
Use:  <p> text here (a paragraph) </p>
and:  <code> code here </code>
to format your post, it's "PerlMonks-approved HTML":



  • Posts are HTML formatted. Put <p> </p> tags around your paragraphs. Put <code> </code> tags around your code and data!
  • Titles consisting of a single word are discouraged, and in most cases are disallowed outright.
  • Read Where should I post X? if you're not absolutely sure you're posting in the right place.
  • Please read these before you post! —
  • Posts may use any of the Perl Monks Approved HTML tags:
    a, abbr, b, big, blockquote, br, caption, center, col, colgroup, dd, del, details, div, dl, dt, em, font, h1, h2, h3, h4, h5, h6, hr, i, ins, li, ol, p, pre, readmore, small, span, spoiler, strike, strong, sub, summary, sup, table, tbody, td, tfoot, th, thead, tr, tt, u, ul, wbr
  • You may need to use entities for some characters, as follows. (Exception: Within code tags, you can put the characters literally.)
            For:     Use:
    & &amp;
    < &lt;
    > &gt;
    [ &#91;
    ] &#93;
  • Link using PerlMonks shortcuts! What shortcuts can I use for linking?
  • See Writeup Formatting Tips and other pages linked from there for more info.